I collected this pupa and several like it from the same stream and on the same day as this larva. I suspect they're the same species. Every pupa I collected was in a brown casing like the one shown in one of the pictures below. I cut this pupa out of its case after a picture so you can see more details. It is close to but not fully developed.
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Larva: Many classes of aquatic insects, such as caddisflies, midges, craneflies, dobsonflies, alderflies, and many more, are known as "larvae" rather than "nymphs" in their juvenile stages. They have mostly soft bodies rather than hard exoskeletons. These insects also advance through a "pupa" stage before reaching adulthood.
Pupa: Any insect which spends most of its juvenile lifetime as a larva first becomes a pupa for a time before emerging as a fully grown adult. Depending on the species, the pupal form can be very important for fly fishermen to imitate.